| ACNE | Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization Maria Ortiz , Henrik Bengtsson , Angel Rubio |
| BatchJobs | Batch Computing with R Bernd Bischl , Michel Lang , Henrik Bengtsson |
| BrailleR | Improved Access for Blind Users A. Jonathan R. Godfrey , Debra Warren , Donal Fitzpatrick , Duncan Murdoch , Greg Snow , Henrik Bengtsson , James Curtis , James Thompson , JooYoung Seo , Marshall Flax , Paul Murrell , Sophie Banks , Timothy Bilton , Tony Hirst , Tsan-Kuang Lee , Volker Sorge , Yihui Xie |
| MPAgenomics | Multi-Patient Analysis of Genomic Markers Quentin Grimonprez , Sjoerd Vosse , Mark van de Wiel , Pierre Neuvial , Henrik Bengtsson , Ilari Scheinin , Guillemette Marot , Samuel Blanck , Inria |
| PSCBS | Analysis of Parent-Specific DNA Copy Numbers Henrik Bengtsson , Pierre Neuvial , Venkatraman E. Seshan , Adam B. Olshen , Paul T. Spellman , Richard A. Olshen , Frank E Harrell Jr |
| R.cache | Fast and Light-Weight Caching (Memoization) of Objects and Results to Speed Up Computations Henrik Bengtsson |
| R.devices | Unified Handling of Graphics Devices Henrik Bengtsson |
| R.filesets | Easy Handling of and Access to Files Organized in Structured Directories Henrik Bengtsson |
| R.huge | Methods for Accessing Huge Amounts of Data [deprecated] Henrik Bengtsson |
| R.matlab | Read and Write MAT Files and Call MATLAB from Within R Henrik Bengtsson , Andy Jacobson , Jason Riedy |
| R.methodsS3 | S3 Methods Simplified Henrik Bengtsson |
| R.oo | R Object-Oriented Programming with or without References Henrik Bengtsson |
| R.rsp | Dynamic Generation of Scientific Reports Henrik Bengtsson |
| R.utils | Various Programming Utilities Henrik Bengtsson |
| RPushbullet | R Interface to the Pushbullet Messaging Service Dirk Eddelbuettel with contributions by Bill Evans , Mike Birdgeneau , Henrik Bengtsson , Seth Wenchel , Colin Gillespie , Chan-Yub Park |
| TopDom | An Efficient and Deterministic Method for Identifying Topological Domains in Genomes Henrik Bengtsson , Hanjun Shin , ctr , Harris Lazaris , ctr , Gangqing Hu , ctr , Xianghong Zhou , ctr |
| aroma.affymetrix | Analysis of Large Affymetrix Microarray Data Sets Henrik Bengtsson , James Bullard , Kasper Hansen , Pierre Neuvial , Elizabeth Purdom , Mark Robinson , Ken Simpson |
| aroma.apd | A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated] Henrik Bengtsson |
| aroma.cn | Copy-Number Analysis of Large Microarray Data Sets Henrik Bengtsson , Pierre Neuvial |
| aroma.core | Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework Henrik Bengtsson , Mark Robinson , Ken Simpson |
| broom | Convert Statistical Objects into Tidy Tibbles David Robinson , Alex Hayes , Simon Couch , Posit Software , PBC , Indrajeet Patil , Derek Chiu , Matthieu Gomez , Boris Demeshev , Dieter Menne , Benjamin Nutter , Luke Johnston , Ben Bolker , Francois Briatte , Jeffrey Arnold , Jonah Gabry , Luciano Selzer , Gavin Simpson , Jens Preussner , Jay Hesselberth , Hadley Wickham , Matthew Lincoln , Alessandro Gasparini , Lukasz Komsta , Frederick Novometsky , Wilson Freitas , Michelle Evans , Jason Cory Brunson , Simon Jackson , Ben Whalley , Karissa Whiting , Yves Rosseel , Michael Kuehn , Jorge Cimentada , Erle Holgersen , Karl Dunkle Werner , Ethan Christensen , Steven Pav , Paul PJ , Ben Schneider , Patrick Kennedy , Lily Medina , Brian Fannin , Jason Muhlenkamp , Matt Lehman , Bill Denney , Nic Crane , Andrew Bates , Vincent Arel-Bundock , Hideaki Hayashi , Luis Tobalina , Annie Wang , Wei Yang Tham , Clara Wang , Abby Smith , Jasper Cooper , E Auden Krauska , Alex Wang , Malcolm Barrett , Charles Gray , Jared Wilber , Vilmantas Gegzna , Eduard Szoecs , Frederik Aust , Angus Moore , Nick Williams , Marius Barth , Bruna Wundervald , Joyce Cahoon , Grant McDermott , Kevin Zarca , Shiro Kuriwaki , Lukas Wallrich , James Martherus , Chuliang Xiao , Joseph Larmarange , Max Kuhn , Michal Bojanowski , Hakon Malmedal , Clara Wang , Sergio Oller , Luke Sonnet , Jim Hester , Ben Schneider , Bernie Gray , Mara Averick , Aaron Jacobs , Andreas Bender , Sven Templer , Paul-Christian Buerkner , Matthew Kay , Erwan Le Pennec , Johan Junkka , Hao Zhu , Benjamin Soltoff , Zoe Wilkinson Saldana , Tyler Littlefield , Charles T. Gray , Shabbh E. Banks , Serina Robinson , Roger Bivand , Riinu Ots , Nicholas Williams , Nina Jakobsen , Michael Weylandt , Lisa Lendway , Karl Hailperin , Josue Rodriguez , Jenny Bryan , Chris Jarvis , Greg Macfarlane , Brian Mannakee , Drew Tyre , Shreyas Singh , Laurens Geffert , Hong Ooi , Henrik Bengtsson , Eduard Szocs , David Hugh-Jones , Matthieu Stigler , Hugo Tavares , R. Willem Vervoort , Brenton M. Wiernik , Josh Yamamoto , Jasme Lee , Taren Sanders , Ilaria Prosdocimi , Daniel D. Sjoberg , Alex Reinhart |
| calmate | Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation Maria Ortiz , Ander Aramburu , Henrik Bengtsson , Pierre Neuvial , Angel Rubio |
| covr | Test Coverage for Packages Jim Hester , Willem Ligtenberg , Kirill Müller , Henrik Bengtsson , Steve Peak , Kirill Sevastyanenko , Jon Clayden , Robert Flight , Eric Brown , Brodie Gaslam , Will Beasley , Robert Krzyzanowski , Markus Wamser , Karl Forner , Gergely Daróczi , Jouni Helske , Kun Ren , Jeroen Ooms , Ken Williams , Chris Campbell , David Hugh-Jones , Qin Wang , Doug Kelkhoff , Ivan Sagalaev , Mark Otto , Jacob Thornton , Bootstrap contributors , Twitter , Inc |
| dChipIO | Methods for Reading dChip Files Henrik Bengtsson |
| digest | Create Compact Hash Digests of R Objects Dirk Eddelbuettel with contributions by Antoine Lucas , Jarek Tuszynski , Henrik Bengtsson , Simon Urbanek , Mario Frasca , Bryan Lewis , Murray Stokely , Hannes Muehleisen , Duncan Murdoch , Jim Hester , Wush Wu , Qiang Kou , Thierry Onkelinx , Michel Lang , Viliam Simko , Kurt Hornik , Radford Neal , Kendon Bell , Matthew de Queljoe , Ion Suruceanu , Bill Denney , Dirk Schumacher , Winston Chang , Dean Attali , Michael Chirico. |
| doFuture | Use Foreach to Parallelize via the Future Framework Henrik Bengtsson |
| future | Unified Parallel and Distributed Processing in R for Everyone Henrik Bengtsson |
| future.apply | Apply Function to Elements in Parallel using Futures Henrik Bengtsson , R Core Team |
| future.batchtools | A Future API for Parallel and Distributed Processing using 'batchtools' Henrik Bengtsson |
| future.callr | A Future API for Parallel Processing using 'callr' Henrik Bengtsson |
| future.mirai | A 'Future' API for Parallel Processing using 'mirai' Henrik Bengtsson , Charlie Gao |
| future.tests | Test Suite for 'Future API' Backends Henrik Bengtsson , The R Consortium |
| globals | Identify Global Objects in R Expressions Henrik Bengtsson , Davis Vaughan |
| googleComputeEngineR | R Interface with Google Compute Engine Mark Edmondson , Scott Chamberlain , Winston Chang , Henrik Bengtsson , Jacki Novik |
| knitr | A General-Purpose Package for Dynamic Report Generation in R Yihui Xie , Abhraneel Sarma , Adam Vogt , Alastair Andrew , Alex Zvoleff , Amar Al-Zubaidi , Andre Simon , Aron Atkins , Aaron Wolen , Ashley Manton , Atsushi Yasumoto , Ben Baumer , Brian Diggs , Brian Zhang , Bulat Yapparov , Cassio Pereira , Christophe Dervieux , David Hall , David Hugh-Jones , David Robinson , Doug Hemken , Duncan Murdoch , Elio Campitelli , Ellis Hughes , Emily Riederer , Fabian Hirschmann , Fitch Simeon , Forest Fang , Frank E Harrell Jr , Garrick Aden-Buie , Gregoire Detrez , Hadley Wickham , Hao Zhu , Heewon Jeon , Henrik Bengtsson , Hiroaki Yutani , Ian Lyttle , Hodges Daniel , Jacob Bien , Jake Burkhead , James Manton , Jared Lander , Jason Punyon , Javier Luraschi , Jeff Arnold , Jenny Bryan , Jeremy Ashkenas , Jeremy Stephens , Jim Hester , Joe Cheng , Johannes Ranke , John Honaker , John Muschelli , Jonathan Keane , JJ Allaire , Johan Toloe , Jonathan Sidi , Joseph Larmarange , Julien Barnier , Kaiyin Zhong , Kamil Slowikowski , Karl Forner , Kevin K. Smith , Kirill Mueller , Kohske Takahashi , Lorenz Walthert , Lucas Gallindo , Marius Hofert , Martin Modrák , Michael Chirico , Michael Friendly , Michal Bojanowski , Michel Kuhlmann , Miller Patrick , Nacho Caballero , Nick Salkowski , Niels Richard Hansen , Noam Ross , Obada Mahdi , Pavel N. Krivitsky , Pedro Faria , Qiang Li , Ramnath Vaidyanathan , Richard Cotton , Robert Krzyzanowski , Rodrigo Copetti , Romain Francois , Ruaridh Williamson , Sagiru Mati , Scott Kostyshak , Sebastian Meyer , Sietse Brouwer , Simon de Bernard , Sylvain Rousseau , Taiyun Wei , Thibaut Assus , Thibaut Lamadon , Thomas Leeper , Tim Mastny , Tom Torsney-Weir , Trevor Davis , Viktoras Veitas , Weicheng Zhu , Wush Wu , Zachary Foster , Zhian N. Kamvar , Posit Software , PBC |
| listenv | Environments Behaving (Almost) as Lists Henrik Bengtsson |
| markdown | Render Markdown with 'commonmark' Yihui Xie , JJ Allaire , Jeffrey Horner , Henrik Bengtsson , Jim Hester , Yixuan Qiu , Kohske Takahashi , Adam November , Nacho Caballero , Jeroen Ooms , Thomas Leeper , Joe Cheng , Andrzej Oles , Posit Software , PBC |
| matrixStats | Functions that Apply to Rows and Columns of Matrices (and to Vectors) Henrik Bengtsson , Constantin Ahlmann-Eltze , Hector Corrada Bravo , Robert Gentleman , Jan Gleixner , Peter Hickey , Ola Hossjer , Harris Jaffee , Dongcan Jiang , Peter Langfelder , Brian Montgomery , Angelina Panagopoulou , Hugh Parsonage , Jakob Peder Pettersen |
| parallelly | Enhancing the 'parallel' Package Henrik Bengtsson |
| pbapply | Adding Progress Bar to '*apply' Functions Peter Solymos , Zygmunt Zawadzki , Henrik Bengtsson , R Core Team |
| port4me | Get the Same, Personal, Free 'TCP' Port over and over Henrik Bengtsson , Jeroen Ooms |
| princurve | Fit a Principal Curve in Arbitrary Dimension Trevor Hastie , Andreas Weingessel , Kurt Hornik , Henrik Bengtsson , Robrecht Cannoodt |
| profmem | Simple Memory Profiling for R Henrik Bengtsson |
| progressr | An Inclusive, Unifying API for Progress Updates Henrik Bengtsson |
| rgee | R Bindings for Calling the 'Earth Engine' API Cesar Aybar , Wu Qiusheng , Lesly Bautista , Roy Yali , Antony Barja , Kevin Ushey , Jeroen Ooms , Tim Appelhans , JJ Allaire , Yuan Tang , Samapriya Roy , MariaElena Adauto , Gabriel Carrasco , Henrik Bengtsson , Jeffrey Hollister , Gennadii Donchyts , Marius Appel |
| seguid | Sequence Globally Unique Identifier (SEGUID) Checksums Henrik Bengtsson |
| startup | Friendly R Startup Configuration Henrik Bengtsson |